Glutathione S-Transferase Gene Family in Gossypium raimondii and G. arboreum: Comparative Genomic Study and their Expression under Salt Stress
Identifieur interne : 000190 ( Main/Exploration ); précédent : 000189; suivant : 000191Glutathione S-Transferase Gene Family in Gossypium raimondii and G. arboreum: Comparative Genomic Study and their Expression under Salt Stress
Auteurs : Yating Dong [République populaire de Chine] ; Cong Li [République populaire de Chine] ; Yi Zhang [République populaire de Chine] ; Qiuling He [République populaire de Chine] ; Muhammad K. Daud [Pakistan] ; Jinhong Chen [République populaire de Chine] ; Shuijin Zhu [République populaire de Chine]Source :
- Frontiers in Plant Science [ 1664-462X ] ; 2016.
Abstract
Glutathione S-transferases (GSTs) play versatile functions in multiple aspects of plant growth and development. A comprehensive genome-wide survey of this gene family in the genomes of
Url:
DOI: 10.3389/fpls.2016.00139
PubMed: 26904090
PubMed Central: 4751282
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Glutathione S-Transferase Gene Family in <italic>Gossypium raimondii</italic> and <italic>G. arboreum</italic>: Comparative Genomic Study and their Expression under Salt Stress</title><author><name sortKey="Dong, Yating" sort="Dong, Yating" uniqKey="Dong Y" first="Yating" last="Dong">Yating Dong</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Agronomy, Zhejiang University</institution><country>Hangzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Li, Cong" sort="Li, Cong" uniqKey="Li C" first="Cong" last="Li">Cong Li</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Agronomy, Zhejiang University</institution><country>Hangzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Yi" sort="Zhang, Yi" uniqKey="Zhang Y" first="Yi" last="Zhang">Yi Zhang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Agronomy, Zhejiang University</institution><country>Hangzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="He, Qiuling" sort="He, Qiuling" uniqKey="He Q" first="Qiuling" last="He">Qiuling He</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Agronomy, Zhejiang University</institution><country>Hangzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Daud, Muhammad K" sort="Daud, Muhammad K" uniqKey="Daud M" first="Muhammad K." last="Daud">Muhammad K. Daud</name><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Department of Biotechnology and Genetic Engineering, Kohat University of Science and Technology</institution><country>Kohat, Pakistan</country></nlm:aff><country xml:lang="fr">Pakistan</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Chen, Jinhong" sort="Chen, Jinhong" uniqKey="Chen J" first="Jinhong" last="Chen">Jinhong Chen</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Agronomy, Zhejiang University</institution><country>Hangzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Zhu, Shuijin" sort="Zhu, Shuijin" uniqKey="Zhu S" first="Shuijin" last="Zhu">Shuijin Zhu</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Agronomy, Zhejiang University</institution><country>Hangzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26904090</idno><idno type="pmc">4751282</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4751282</idno><idno type="RBID">PMC:4751282</idno><idno type="doi">10.3389/fpls.2016.00139</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000302</idno><idno type="wicri:Area/Pmc/Curation">000301</idno><idno type="wicri:Area/Pmc/Checkpoint">000154</idno><idno type="wicri:Area/Ncbi/Merge">001F19</idno><idno type="wicri:Area/Ncbi/Curation">001F19</idno><idno type="wicri:Area/Ncbi/Checkpoint">001F19</idno><idno type="wicri:Area/Main/Merge">000190</idno><idno type="wicri:Area/Main/Curation">000190</idno><idno type="wicri:Area/Main/Exploration">000190</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Glutathione S-Transferase Gene Family in <italic>Gossypium raimondii</italic> and <italic>G. arboreum</italic>: Comparative Genomic Study and their Expression under Salt Stress</title><author><name sortKey="Dong, Yating" sort="Dong, Yating" uniqKey="Dong Y" first="Yating" last="Dong">Yating Dong</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Agronomy, Zhejiang University</institution><country>Hangzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Li, Cong" sort="Li, Cong" uniqKey="Li C" first="Cong" last="Li">Cong Li</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Agronomy, Zhejiang University</institution><country>Hangzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Yi" sort="Zhang, Yi" uniqKey="Zhang Y" first="Yi" last="Zhang">Yi Zhang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Agronomy, Zhejiang University</institution><country>Hangzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="He, Qiuling" sort="He, Qiuling" uniqKey="He Q" first="Qiuling" last="He">Qiuling He</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Agronomy, Zhejiang University</institution><country>Hangzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Daud, Muhammad K" sort="Daud, Muhammad K" uniqKey="Daud M" first="Muhammad K." last="Daud">Muhammad K. Daud</name><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Department of Biotechnology and Genetic Engineering, Kohat University of Science and Technology</institution><country>Kohat, Pakistan</country></nlm:aff><country xml:lang="fr">Pakistan</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Chen, Jinhong" sort="Chen, Jinhong" uniqKey="Chen J" first="Jinhong" last="Chen">Jinhong Chen</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Agronomy, Zhejiang University</institution><country>Hangzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Zhu, Shuijin" sort="Zhu, Shuijin" uniqKey="Zhu S" first="Shuijin" last="Zhu">Shuijin Zhu</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Agronomy, Zhejiang University</institution><country>Hangzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author></analytic><series><title level="j">Frontiers in Plant Science</title><idno type="eISSN">1664-462X</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Glutathione S-transferases (GSTs) play versatile functions in multiple aspects of plant growth and development. A comprehensive genome-wide survey of this gene family in the genomes of <italic>G. raimondii</italic> and <italic>G. arboreum</italic> was carried out in this study. Based on phylogenetic analyses, the <italic>GST</italic> gene family of both two diploid cotton species could be divided into eight classes, and approximately all the <italic>GST</italic> genes within the same subfamily shared similar gene structure. Additionally, the gene structures between the orthologs were highly conserved. The chromosomal localization analyses revealed that <italic>GST</italic> genes were unevenly distributed across the genome in both <italic>G. raimondii</italic> and <italic>G. arboreum</italic>. Tandem duplication could be the major driver for the expansion of <italic>GST</italic> gene families. Meanwhile, the expression analysis for the selected 40 <italic>GST</italic> genes showed that they exhibited tissue-specific expression patterns and their expression were induced or repressed by salt stress. Those findings shed lights on the function and evolution of the <italic>GST</italic> gene family in <italic>Gossypium</italic> species.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Armstrong, R N" uniqKey="Armstrong R">R. N. Armstrong</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bjellqvist, B" uniqKey="Bjellqvist B">B. Bjellqvist</name></author><author><name sortKey="Basse, B" uniqKey="Basse B">B. Basse</name></author><author><name sortKey="Olsen, E" uniqKey="Olsen E">E. Olsen</name></author><author><name sortKey="Celis, J E" uniqKey="Celis J">J. E. Celis</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Blanc, G" uniqKey="Blanc G">G. 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Zhu</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Pakistan</li><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Dong, Yating" sort="Dong, Yating" uniqKey="Dong Y" first="Yating" last="Dong">Yating Dong</name></noRegion><name sortKey="Chen, Jinhong" sort="Chen, Jinhong" uniqKey="Chen J" first="Jinhong" last="Chen">Jinhong Chen</name><name sortKey="He, Qiuling" sort="He, Qiuling" uniqKey="He Q" first="Qiuling" last="He">Qiuling He</name><name sortKey="Li, Cong" sort="Li, Cong" uniqKey="Li C" first="Cong" last="Li">Cong Li</name><name sortKey="Zhang, Yi" sort="Zhang, Yi" uniqKey="Zhang Y" first="Yi" last="Zhang">Yi Zhang</name><name sortKey="Zhu, Shuijin" sort="Zhu, Shuijin" uniqKey="Zhu S" first="Shuijin" last="Zhu">Shuijin Zhu</name></country><country name="Pakistan"><noRegion><name sortKey="Daud, Muhammad K" sort="Daud, Muhammad K" uniqKey="Daud M" first="Muhammad K." last="Daud">Muhammad K. 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